The phrase "alignment in the third" is grammatically correct and can be used in written English.
It can be used in contexts where you are discussing alignment related to a third item, position, or aspect, such as in a series or a ranking.
Example: "The alignment in the third position of the data set is crucial for accurate analysis."
Alternatives: "alignment in the third position" or "third alignment".
Holmes sustained the injury — to his Lisfranc ligament, a band of tissue that connects the front of his foot to the midfoot and is essential in maintaining the foot's alignment — in the fourth quarter of the Jets' 34-0 loss to San Francisco on Sunday.
The major difference in the alignment occurred starting from amino acid position 95 and there was shift in the alignment in the fifth helix.
Despite the difference in the alignment in the fifth helix, the overall topology of the full-length Rev exon 2 is very similar to that of the truncated version (a.a. 31 145) shown in Fig. 3A.
Since alignments can be ranked, correct assignments will be saved as unique alignments in the first filtering step (Figure S1).
Then the number of alignments in the second invocation with cost higher than the optimal one (as determined by the first invocation) is counted.
The alignments in the first two classes were further processed using the Alpheus pipeline (Miller et al. 2008) for deriving per-gene read counts and sequence polymorphism calls.
After 80 alignments in the fourth category were removed, each of the 299 remaining alignments was filtered to eliminate redundant or incomplete sequences (less than 50% of the average length of the alignment) using neighbor-joining (NJ) distance trees with bootstrapping (BP) using SeaView version 4.4.0 [ 60].
The framework contains hand-curated reference phylogenies and alignments; in the first full release that we describe here (MLTreeMap version 2.011), these references encompass a total of 44 distinct gene families that have been selected to address both taxonomic as well as functional aspects of microbial assemblages.
The first step performs a pre-detection of signatures alignment, and in the second step the alignment is corrected and the signatures are detected by a matcher.
