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In addition, the extent of alignment in the present study is somewhat less than that for confluent ECs [13].
The rate of SF alignment in the present study is faster than the rate we reported for confluent ECs [13], thus the value of k0 is higher (3×10−4 vs. 10−5 s−10−5
Short stems may facilitate minimally invasive surgery (Dabboussi et al. 2012), and give better alignment, but there was no difference between group means in HKA alignment in the present study.
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The increase in internal knee extensor moment between the PF and DF alignments in the present study is consistent with previous investigations in other patient populations, suggesting a more DF aligned AFO may affect the knee joint moment similarly across patient populations.
The extreme branch length differences between Gnetales and other lineages for sites at the most varied end of the OV-sorted alignment suggests an issue with alignment of some amino acid positions, despite a conservative approach being used in generating the sequence alignments in the present study.
The GH11 family is a highly diversified and fast-evolving gene family and phylogenies based either on full-length protein sequence alignments or on partial alignments, as in the present case, clearly do not reflect the species phylogenies and comprise very few well-supported internal branches (Fig. 4).
Likely reasons for the corresponding low-alignment scores in the present study are the presence of a SD at the 5p15.1 BP (rearrangement 8) and a LTR repeat at the 5p14.2 BP (rearrangement 10) (Supplementary Table 3).
Based on this observation, a structural alignment was further performed in the present study.
These parameters were applied to all the BLAST alignments that were performed in the present study.
All alignments and phylogenies used in the present paper are available on the Dryad repository at doi: http://10.5061/dryad.vj7nr.
The first alignment was between the present epitopes in each region to determine the consensus recognition sequence.
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