The phrase "alignment in each" is grammatically correct and can be used in written English.
It can be used when discussing the consistency or agreement of elements within a group or set.
Example: "We need to ensure alignment in each of our project teams to achieve our overall goals."
Alternatives: "consistency in every" or "agreement in each".
In practice, it is often useful to do this iteratively, cleaning up a particular region of the alignment in each of several closely related groups of sequences, then aligning the groups of sequences to each other to reveal higher-level correspondences that rely more on structure than on sequence.
We sampled points every n pixels while doing raster scanning, and examined the accuracy of alignment in each sampling.
And yet all of those values that favor the victims disappear when local prosecutors are called upon to prosecute the crimes of members of their own teams -- the police force which supplies them with cooperation and mission alignment in each and every case they prosecute.
The resulting amino acid alignments were then computationally reverse-translated to nucleotide alignments using the corresponding nucleotide sequences from GenBank (http://www.ncbi.nlm.nih.gov/), with the arrangement of the nucleotide triplets reflecting the protein alignment in each case (gene set).
MI-GRAAL [ 14] does not produce same alignment in each run since it has a random seed procedure.
In order to ensure that our position criteria for non- cerevisiae species are meaningful, we also require conservation of starting ATG codon in alignment in each considered species.
After aligning, alignments in each query were sorted according to the score and then the identity.
Table 6 gives the number of correctly aligned residues across all the alignments in each sequence identity bracket.
Two types of regions were identified between neighboring blocks: (1) simple indels, where the sequence was cleanly inserted/deleted in one genome relative to the other and (2) 816 cases where sequence was present in both the N2 and Hawaiian genomes but could not be accurately aligned (alignment using various Smith Waterman algorithm implementations revealed different alignments in each case).
In addition, copies (4 50) in each species (supplementary table S1, Supplementary Material online) were also aligned using MUSCLE, and their consensus sequences were reconstructed using the above multiple alignments in each genome using DAMBE (Xia and Xie 2001) after gaps were removed.
The scale on the side of each plot is proportional to the number of alignments in each partition.
