Sentence examples for alignment identifier from inspiring English sources

All TcSNP alignment identifiers mentioned in this work (e.g. tcsnp:438249) can be accessed using the following standard URI, and replacing the alignment identifier (e.g. 438249) in each case: http://snps.tcruzi.org/genes/alignment?assembly_id=438249.

The RPS-BLAST outputs were similarly processed using an in-house script, retaining the following information from the top-scoring alignments: gene identifier, description, score and e-value.

Additionally, the corresponding phylogenetic trees, PFAM-A alignments and accession identifier data on all sequences including those that could not be retrieved are provided in the database.

For each comparison, a report containing sequence identifiers, alignment length, coordinates of the most similar regions, percentage of identity, number of gaps, raw and bit scores and E-value was returned.

TSP55 could be annotated as it contains the DUF19 domain (match over 126 amino acids in alignment; see eg, GenBank identifier GE637487.1).

EvoDB is a catalogue of the evolutionary rate profiles and provides the corresponding phylogenetic trees, PFAM-A alignments and annotated accession identifier data.

The distribution of rate values for alignment positions by AIR-Identifier was similar, although intron regions were significantly more highly variable than all three exon partitions, and variability of tRNA loci was significantly higher on average than rRNA and exon regions with the exclusion of ycf 1 and ycf 2 (Additional File 3).

A good correlation in response between platforms was found among the 48 genes in the NIEHS data set that could be matched to probes on the Affymetrix RGU34A array by UniGene identifier or sequence alignment.

The web site provides tools for querying and analysing the data as well as a wide range of documentation, and supports full text and field-based text searches, sequence similarity searching, multiple sequence alignments, batch retrieval and database identifier mapping.

In the phylogenetic method, the 5 steps are: Homolog Gene Family Builder, Multiple Sequence Alignment (MSA) Generator, Phylogenetic Tree Creator, Speciation/Duplication Events Identifier and Diagnostic Character Identifier.

The map function reemits the end-to-end alignments as key–value pairs with the read identifier as the key and the alignment information as the value.