Sentence examples for alignment homogeneity from inspiring English sources

Safety Criteria allow to express a judgment on road alignment homogeneity on the basis of the comparison between design speed SD and operating speed S85 along the alignments (operating speed is represented by the 85th-percentile speed of a sample of vehicles).

To eliminate poorly aligned regions, each alignment column was assigned a homogeneity value by scaling the sum-of-pairs score within the column between those of a homogeneous column (the same residue in all aligned sequences) and a random column (YIW, I. A. Seledtsov, K. S. Makarova, unpublished).

All alignment sets were examined for homogeneity of base frequencies and substitution saturation.

Whereas the gap size strongly influences plasmonic coupling, the overall alignment quality is crucial for homogeneity.

We noticed no spatial preference for intron insertion (homogeneity test ; the alignment was divided in ten parts of equal length, p = 0.71, n.s)., except that there were no introns in the putative signal peptides.

The homogeneity of the sequence alignment (as indicated by conserved stretches of residues and the absence of large gaps or inserts), a high bootstrap-value at the branching point that separates the orthologous cluster from the other sequences, and most importantly, a clear difference in conserved gene-context within the group were used to evaluate the necessity of such sub-division.

Positions with more than 50% of gaps and/or homogeneity <0.1 were removed from the alignment for phylogenetic analysis [ 62].

Albeit the stationary-based character trimming may be extended by the use of overall tests for marginal symmetry (i.e. assessing the compositional homogeneity in the complete multiple sequence alignment [ 75, 31]), we think that using pairwise p-values allows more precise sorting of the characters c according to their σ(c) score value (see above).

MtZOA is a general empirical model which implies among-site homogeneity, as in MtRev: all sites of the alignment are treated equally and modelled using the same replacement matrix and stationary frequencies [ 31].

Contrary to the homogeneity found in the DBD, inspection of the CLUSTAL alignment of the 40 orthologs (Figure S1) revealed that gaps were present in the bZip dimerization domain, indicating that insertions and/or deletions had occurred in this region as the Pezizomycotina evolved.

To evaluate the structural homogeneity of the Hsc70 Auxilin:dataata set, we performed multi-reference alignment using six different references.