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The two channels were manually aligned, via alignment grid, to within 1 2 pixels.
Seed matches were used to define candidate offsets between sequences, and those offsets were used to define diagonal corridors of permissibility through the dynamic programming alignment grid.
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The method correlates the distributions of surface normals for rotational alignment and grid occupancy for translational alignment with hue filters applied during the construction of surface normal histograms and occupancy grids.
Instead, their basic function is to favor the appearance of a certain phase shift of the fields in the post-synaptic unit relative to the pre-synaptic one, and consequently to induce the alignment of grids, producing a common orientation in the population (Si and Treves, 2013).
Within this scheme, we propose two methods, which we call face grid alignment (FGA) and OCDC alignment (OCDCA).
Up to now, the best model reported has been the one based on the "Combined Electrostatic and Shape Similarity Matrix" (Q loo 2 = 0.941, var = 6), which is an alignment- and grid-based method known to be computationally expensive.
Images were imported and aligned with clone position information (Agilent GAL file) using automated and manual grid alignment features.
This paper describes BioGAT, Bioinformatics Grid Alignment Toolkit, that offers optimized brokering and a data management system to exploit various bioinformatics alignment tools wrapped as Web Services in a Grid architecture.
Scanned images were then imported into GenePix Pro 6.0 software (Axon) for grid alignment and data extraction.
The paper presents a novel shock filter based approach for automatic microarray grid alignment.
Decreased discretization artifacts and decreased sensitivity to grid alignment are demonstrated, compared to the standard link bounce-back boundary condition.
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