The phrase "alignment generation" is correct and usable in written English.
It can be used in contexts related to creating or establishing alignment, often in fields like technology, design, or project management.
Example: "The team focused on alignment generation to ensure all departments were on the same page before the project launch."
Alternatives: "alignment creation" or "alignment development".
Many factors influence alignment generation, including homology prediction, transcript choice, aligner choice, and species usage.
As depicted in Fig. 1, the dissectHMMER workflow can be generalized into three stages: 1) sequence-to-domain alignment generation, 2) score reconstruction/dissection/statistical re-evaluation/hits classification and 3) error-adjusted domain coverage computation.
The technique involves the following new elements: similarity scoring functions, a dynamic programming equation, a back tracking procedure, and an alignment generation method.
Multiple alignment generation and analysis.
This pipeline uses BWA [ 32] for alignment generation.
ClustalW2 [ 61] was used for protein sequence alignment generation.
The multiple sequence alignments used in the analysis and the full GREMLIN results for all the calculations described in the paper are provided at http://gremlin.bakerlab.org/complexes/ along with a web-server for paired-alignment generation, coevolution analysis and contact prediction/Rosetta restraint generation.
Based on BLAST search and alignments generations, the predicted 3D model of the BauA could be applied to all BauA proteins in Acinetobater.
Bayesian analyses were conducted using MrBayes v.3.2.1 [ 86], running each analysis for 2 million (protein alignments) or 5 million (nucleotide alignments) generations with one cold and three heated chains, and sampling every 1000 generations.
23 Psiblast was used for the Multiple Sequence Alignment (MSA) generation method with three MSA generation iterations and a local alignment mode.
Application of biomechanical stimuli results in remodeling of the cell body mainly through alignment and generation of stress fibers (Wang et al. 2001).
