Sentence examples for alignment from the user from inspiring English sources

All changes are recorded in the release history since the launch of EMPOP 2. SAM is a valuable contribution for mtDNA database queries as it takes the burden of sequence alignment from the user.

In our program, the default π vector is calculated from the alignment while the user has the option to optimize the π vector for ancestral sequence reconstruction.

The conservation threshold corresponds to the minimum percentage of columns, from the original alignment, which the user wants to include in the trimmed alignment.

Before starting the alignment algorithm, the user has the possibility to manually specify homology relations.

With Genome alignment parameters the user can personalize the mapping phase performed by TopHat2.

It is well-annotated and allows custom input from the user's alignments and gene trees.

An important question to address would be, whether users experience difficulties interpreting the alignment, i.e. whether minimizing the number or length of jump edges leads to a visualization which is not optimal from the user's point of view.

will be requested from the user.

Get input from the user with MsgBox.

The theseus_align wrapper script will automatically extract the proper sequences from the Protein Data Bank (PDB) files, align them with a sequence alignment program of the users choice and superposition the structures based on this alignment with THESEUS.

If the alignment score exceeds the user-defined threshold, the aligned region plus the remainder after the alignment are removed.