The phrase "alignment found that" is correct and usable in written English.
It can be used in contexts where a study, analysis, or assessment has determined a specific outcome or conclusion regarding alignment.
Example: "The alignment found that the new strategy significantly improved team performance."
Alternatives: "the analysis revealed that" or "the assessment indicated that".
A previous study that systematically tested different potential alignments found that such an alignment produced significant results between hormone levels and sexual behaviour in female baboons [ 23].
When ungapped alignment strategy is chosen, the alignment task is reduced to a much simpler position shift problem, and Mahony et al. found that ungapped alignment works well for most datasets [8].
We also found that alignments generated without structural information identified fewer pairs in contact in the folded protein compared to alignments generated with structural information.
However, by using overlap of CRMs in the EPO multiple sequence alignment as a filter, we found that shared CRMs give an increased number of significant enrichments using the ChIP-seq enrichment analysis tool, GREAT.
Although this problem can be addressed by filtering the read alignments, we find that strict filtering often leads to a reduced sensitivity of transcript prediction and introduces artifacts, for instance, in the presence of unknown genomic variations.
After a multiple sequence alignment analysis, we could find that Glycine-rich peptides in Hainan-sourced population have more diversity and also a higher abundance.
Mapping quality measures the probability that the alignment found is wrong, measured on a Phred scale.
When we checked the sequence alignment, we found that this region aligned poorly since the sequences homology level was lower in domain I.
We find that local alignments are better than multiple alignments for a detailed match of the TFBSs and for the identification of functional elements in orthologous sequences.
We observed the details of structural alignment and found that CDR3 and contact regions of TCR and antibody were well aligned together.
