The phrase "alignment for the next" is not complete but can be correct and usable in written English depending on the context.
You can use it when discussing preparation or coordination for an upcoming event, task, or phase.
Example: "We need to ensure alignment for the next project phase to meet our deadlines."
Alternatives: "coordination for the next" or "preparation for the next".
A partial nucleotide sequence alignment for the WS0086 coding sequence for various ε-proteobacterial species is shown in Figure 1.
A sequence alignment for the -1007 to -684 region is presented in Additional file 2. Anthocyanin and transcript quantifications performed in this study suggested a possible mechanism controlling pigment patterns in apple fruit peels.
We generated an alignment for the DUF3050 family and modelled a representative member using CT610 from Chlamydia trachomatis (PDB: 1RCW [ 34]) as template, to obtain a seven-helix bundle with a potential di-iron center, likely forming the active site (Fig. 4).
The structure based alignment can be produced in many different ways and we used 3DCoffee for structure based alignment using the coordinates of experimental models available in the PDB [38]. Figure 3b illustrates the results of performing structure-based sequence alignments for the UPF0201, L5, and non-L5 RRM proteins.
Evolutionary rates (d S, d N, and d N /d S values) were inferred for the filtered alignments for the 1,452 sets of orthologues for seven amniote species.
To obtain reasonable codon-based alignments, we performed multiple sequence alignments for the 5511 identified orthologues using MUSCLE [ 45] based on the protein sequences.
"If they can get their debt restructuring sorted and deliver another year of decent profitability — their third — then all the stars are in alignment for the I.P.O. next year," said Derek Sadubin, an analyst at the Centre for Asia Pacific Aviation, a consulting firm based in Sydney.
We would like to thank Jim Kent for creating and distributing the BLAT program, which was both a motivation for this work, and was also the basis for our practical large-scale alignment pipeline for the past 18 months.
Next, we performed alignment searches for the 3989 proteins of M. tuberculosis H37Rv against 15 other mycobacterial genomes, generating a matrix of 59835 comparisons, to look for genetic elements that were uniquely found in M. tuberculosis and closely-related pathogenic mycobacteria.
The alignments for these 1080 loci were concatenated into the 'Total1080 matrix' that consists of 385,669 amino acid positions at 75.85 % occupancy (Table 1).
