The phrase "alignment for optimization" is correct and usable in written English.
It can be used in contexts related to improving processes, systems, or strategies to achieve better efficiency or effectiveness.
Example: "The team focused on alignment for optimization to ensure that all departments were working towards the same goals."
Alternatives: "coordination for enhancement" or "synchronization for improvement."
mauveAligner and progressiveMauve were not supplied with the true simulation tree, but rather calculated their own guide tree for anchoring (a variety of local guide trees are used for alignment optimization).
This paper presents a general formulation for optimization of horizontal road alignment, composed of tangential segments and circular curves suitably connected with transition curves (clothoids).
For optimization of the pairwise alignment parameters, the total number of errors was counted in a test dataset of 500 kb for a series of gap opening and gap extension penalties.
This paper presents a model for highway alignment optimization that integrates a GIS with genetic algorithms, examines the effects of various costs on alignment selection, and explores optimization in constrained spaces that realistically reflect the limits on road improvement projects.
RBT-GA is a population based optimization algorithm designed to find the optimal alignment for a set of input protein sequences.
Recently, genetic algorithms, which can search very effectively through complex spaces with huge numbers of local optima, have been successfully developed for highway alignment optimization.
Multiple-sequence alignments were obtained by codon-alignment with the CLUSTAL algorithm [28], and subsequent manual editing for optimization.
RaxML (Stamatakis 2006) was used to calculate maximum likelihood phylogenetic trees for all the alignments, using optimizations for branch lengths and model parameters, and 1,000 rapid bootstrap replicates.
This paper presents an innovative probabilistic alignment optimization tool for underground tunnel construction, which considers uncertainties associated with geology and construction processes.
