Sentence examples for alignment for more from inspiring English sources

See Gusfield's (1997) classical text on sequence alignment for more details.

We performed the likelihood mapping procedure implemented in the TreePuzzle software [ 15, 16] to determine the level of phylogenetic signal/conflict present in each alignment, for more detail see the Methods section.

Trees were constructed for 1,265 gene families with reasonable alignments for more than 3 members.

Current release 18 of Pfam comprises alignments for more than 7973 domains [ 8].

Kalign is faster than ClustalW and produces better alignments for more distantly related sequences.

Due to poorer quality alignments for more distantly related species, this procedure misclassified several more broadly conserved miRNAs as mammalian conserved.

Here, the tool considers the maximum uncertainty by position to be log2 21 = 4.4 for protein alignments (for more details about CheckAlign see [ 63]).

Obtaining biologically accurate alignments for more than two sequences remains a challenge (Notredame, 2007), as even the best methods can fail to readily align conserved motifs (Edgar, 2004).

Constructing paired-sequence alignments for more complex genomic architectures is more involved and requires the ability to distinguish orthologs from paralogs, the subject of active research (Remm et al., 2001; Datta et al., 2009).

We computed substitution patterns and GC* (equilibrium GC-content) in both human and mouse lineages in 1 Mbp windows using triple alignments (for more details, see the Materials and Methods section).

Flexible alignment is correctly seen as an important innovation in aligning protein structures, however our results demonstrate that it is not a panacea: introducing flexibility into alignments greatly enlarges the search space, exacerbating problems in generating high quality alignments for more distantly related proteins.