The phrase "alignment for further" is not correct and lacks clarity in written English.
It may be intended to suggest a continuation or progression of alignment, but it is incomplete and needs additional context to be usable.
Example: "We need to establish alignment for further discussions on the project."
Alternatives: "alignment for additional" or "alignment for continued".
The primary motivation for implementing a new tool was for development of our abYsis antibody database (http://www.abysis.org/), where we required a simple JavaScript component that would enable us to display a set of aligned sequences, sort and select sequences in that alignment for further analysis, and highlight regions of the alignment corresponding to the CDR loop regions of antibodies.
Because of its uncertain placement, its disruptive effect on resolution throughout the kinetoplastid clade, and the fact that A. rosea is not a euglenozoan, this sequence was removed from the alignment for further analysis.
These regions were separately excised from the alignment for further manipulation.
The amino acid alignment was used to create the nucleotide alignment for further analysis [ 68].
In order to obtain a reliable alignment for further analyses, 43 sequences of sloth hair that began at the 3' end of the 18S gene were removed.
Alternatively, the positions belonging to the microsatellites can be eliminated from the alignment for further processing with sequence analysis programs that assume a point mutation mechanism of evolution.
The MacClade program [38] was used to edit the DNA alignments for further analysis.
At the end of the process, after a number of data filtering steps (see Methods), we retained 5892 alignments for further analysis.
This criterion eliminated 1006 multiple sequence alignments, leaving 399 alignments for further analyses.
Because our results are not sensitive to alternative alignment procedures, we used our manually curated alignments for further analysis.
Statistically significant hits (e < 0.01) recovered in these searches were used to generate alignments for further HMM searches of individual genome databases and representatives used for transitive PSI-BLAST searches of the NR database.
