The phrase "alignment for example" is not correct as it lacks proper punctuation and context.
It can be used when introducing a specific instance or illustration related to alignment, but it should be rephrased for clarity.
Example: "We need to focus on alignment; for example, aligning our goals with our team's objectives."
Alternatives: "alignment, such as" or "alignment, for instance".
Thus when three nucleic acid sequences are aligned there are 4 = 64 possible patterns at each position of the alignment, for example, (AAA, AAG, …).
The method presented here will benefit from extrinsic genomic information "addons" for boosting performance via use of homology matching, or EST alignment, for example.
In the case of your sales team, rather than focusing on alignment, for example, set a different goal.
In the United Kingdom, it is not unusual for media organisations to have a specific political alignment; for example, each of the major daily newspapers advised their readers of which of the leaders in the debate would make the best prime minister.
In addition to the alignment, tools exist to improve the quality of an existing alignment, for example, with local indel realignment.
Such positions, where all the shown class Ia and Ib sequences from at least one species are identical to one another but diverge from the general consensus, are indicated by a red number above the alignment (for example, position 52 is a valine in all three macaque sequences, and position 54 is an arginine in all three hamster sequences).
In addition, the mapping directions were also observed in those hybrid alignments; for example 2014draft G448 was found to reversely aligned to M129 (Fig. 6a).
Because of its flexible implementation, it can also be used to display other types of alignments, for example of a cluster of genes (each block representing one gene), to allow for the investigation of synteny.
We manually reviewed the results to remove pseudogenes and questionable variant calls due to mis-alignments (for example, KCNJ12, HYDIN), olfactory receptors (for example, OR9G9, OR9G1), as well as 'dispensable' genes with high frequency loss-of-function mutations in populations [ 20, 26], and we were left with a list of six candidate genes.
This includes visualization software for viewing the resultant assemblies or alignments, for example, Consed (Gordon et al., 1998), Hawkeye (Schatz et al., 2007), EagleView (Huang and Marth, 2008), MapView (Bao et al., 2009), SAMtools' tview (Li et al., 2009) and Maqview (http://maq.sourceforge.net/maqview.shtml).shtml
These genome-scale comparisons are becoming routine and the approaches can be divided into two main categories, alignment-based (for example, an alignment of about 400 universal proteins identified by Segata et al. 2013) and alignment-free (for example, the "google DNA" method described recently; Gautier and Lund 2013).
