The phrase "alignment for every" is correct and usable in written English.
It can be used in contexts where you are discussing the need for alignment or agreement across various elements or groups.
Example: "Our goal is to achieve alignment for every department in the organization to ensure a cohesive strategy."
Alternatives: "alignment for all" or "alignment for each".
Subsequently, only a single best alignment for every region of the C. variabilis NC64A genome was selected by CHAINNET.
The alignment for every read is known, and hence the input SAM datasets consist of reads that are uniquely and perfectly aligned.
We used HOVERGEN to provide a multiple alignment for every family obtained by MUSCLE [ 21]; however, we also performed a further analysis using CLUSTALW [ 22, 23], which is the most commonly used algorithm for this task [ 16, 17, 24].
The top scoring BLASTp alignment for every query protein was considered a "match" if the identity was greater than 75% of the full length and if the alignment contained a perfect match string of at least 20 amino acids [ 29].
Queries on the chicken supercontigs were intersected with queries on the human genome net (the best human-chicken alignment for every part of the chicken genome) and chicken self-chain (alignment of the chicken genome with itself) tracks.
This information includes CEG (or gene) id, cluster name, KO id, COG id, cluster size, enzyme id (EC), the number of strains covered, and the e-value of the similarity alignment for every cluster (or gene) compared against human proteins [ 21].
The algorithm thus identifies database proteins that share local structural similarities with the query protein independent of the global protein folds, and generates structure-based alignments for every query protein-database protein pair.
The DNA sequence of each HLA allele is now accessible to the whole scientific community through an online database which also provides genomic and coding sequence alignments for every locus, nomenclature guidelines, complete listings of alleles and new allele reports, among other information [8], [10].
The flat file also includes "hot links" to the alignments for every non-singleton contig.
In the CEG database, each cluster (gene) is provided with indices such as cluster size, and the results of similarity alignments for every cluster (gene) against human proteins.
All best alignments for every read with a sequence identity of at least 97% were taken into account (–percent-identity 97 –distance-range 0).
