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We also compute the yeast human alignment for different values of α.
We apply HubAlign to PPI networks of yeast and human and report EC, LCCS, S 3 and AFS of their alignment for different values of parameter λ between 0 and 1.
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Sequence alignments for different SSSGP cDNAs are shown in Additional file 6, Figure S6 whereas alignments for RP cDNAs are shown in Additional file 7, Figure S7.
For example, the standard approach, concatenation (which concatenates the multiple sequence alignments for different genes together into one super-alignment, and then estimates a tree on the super-alignment) can return incorrect trees with high confidence (Kubatko and Degnan, 2007).
Evolutionary divergence was estimated in separate pairwise alignments for different functional domains of the OPRM1 gene (Ks, Ka, Ku for exons and Ki for introns) for closely related rodent (mouse and rat) and primate (human and macaca) species, and for distantly related species (human and mouse).
Based on the direct visualization of the MWCNT disentanglement process in the TEM, a polymer physics-based model for the unraveling of MWCNT entanglements, a source of aligned MWCNTs, is proposed that explains differences in MWCNT alignment encountered for different matrix polymers.
Examples of alignments are presented in Figure 4. Table 10 Average alignment errors for different sets of singing-adapted models.
Figure 13 Alignment results for different systems.
Figure 14 Alignment results for different systems under 10 dB SNR condition.
For this reason, we assess the performance of the algorithm in terms of effectiveness by measuring the alignment error for different free-form objects.
Here, we assessed the resulting alignment quality for different values γ=7,8,9 and 10 for the ExpaRNA algorithm.
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