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An analytical pathway to evaluate the physical degree of SWNT alignment for a vertically aligned SWNT film is developed with both transition dipoles parallel and perpendicular to the SWNT axis taken into account.
This could affect alignment slightly, in the case of non-annotation guided alignment, for a small number of ambiguously aligning reads.
We use TM-align (Zhang and Skolnick, 2005b) to build a reference alignment for a protein pair in SALIGN.
Using the above measures, CUSHAW2 is shown to be among the highest-ranked aligners in terms of alignment quality for both the SE and the PE alignment for a variety of error rates and varying amount of indel errors.
It said: "A more optimistic country could be forgiven for thinking that the stars are in alignment for a Murray victory this time.
Increasing the layer thickness from 12.4 to 26.3 μm decreases this effect, due to the greater molecular alignment for a smaller layer thickness.
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Alignment for an insert within 1 mrad in a vertical plane was achieved by an ex-situ adjustment at installation work.
The former aligns reads to a reference, and we can use those alignments for a variety of purposes, including the classification task we present here.
The Reciprocal Smallest Distance (RSD) algorithm [14] generates global sequence alignments for a small number of top BLAST hits against a query gene X from species x.
The sequences of each host population are eventually separated from the co-alignment for a position-by-position comparative analyses.
Again, using the described methodology one can find split-alignment for a contig's 3′ and 5′ ends.
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