Sentence examples for alignment first from inspiring English sources

Step 4: Sequence alignment – First we aligned all LTRs of the same class using ClustalX [ 47] and then performed phylogenetic clustering through maximum parsimony and maximum likelihood analyses using PAUP* 4.0b10 [ 48] to identify the probable paired LTRs.

For the phase alignment, first we need to compute phase angles which is indicated in the algorithm by DOGLEG function and is described in Algorithm 3. Two of the most appealing decomposition properties are smooth decomposition [19] and spectral majorization [13].

For all new investments and for the management of our current ones, we evaluate impact and mission alignment first and foremost, rather than making decisions based on an investment's capacity to meet target returns.

Though each researcher or group might have a preferred approach to each of these steps, the general outline (multiple sequence alignment first, then phylogenetic and sequence analysis second) is highly similar for those who have desired high quality analyses of a small number of sequences.

Unlike the RRS method, ReXSpecies 2.0 belongs to the phylogenetic footprinting methods, generating an alignment first.

Cross-genera marker identification was greatly facilitated by alignment first to draft Astyanax genomic and transcriptomic resources, followed by searches of the homologous sequences in Danio.

Data blocks analysed in the 83-gene alignment included first, second and third codon positions for 79 protein-coding genes, and 4 ribosomal RNA genes.

Sequence logos are a graphical representation of sequence alignments first developed by Schneider and Stephens [24].

Subsequently, four different tree reconstruction strategies were applied on these two alignments: First, ML trees were derived as described above, using LG [ 56], since this model best fit 50 out of 53 of the individual alignments.

Then under alignments (third grouping using BLAST) tree analysis using neighbor joining was performed on the results.

In the 16S alignment, the sixth and seventh eigenpositions identify dissimilarities among the Fungi/Metazoa excluding the Microsporidia and the Rhodophyta and separately the Alveolata, respectively.