Sentence examples for alignment file containing from inspiring English sources

Thus, each H-origin or L-origin gene had an alignment file containing 25 aligned coding sequences (one for each genotype).

An alignment file containing sequence data for all loci and individuals is available as File S1.

Mauve provides a backbone file containing synteny blocks and an alignment file containing the alignments of each synteny block.

For each PPR gene, sequences encoding helix A were selected and concatenated into a single sequence alignment file containing only helix A sequences.

Gene donation events were simulated by replacing a recipient genome sequence with a donor sequence in the alignment file, so that alignment file contains two identical sequences from the donor genome.

The binary alignment file contains global data information (alignment length, data types, model options, partition boundaries) as well as the raw sequences stored in the order of the partitions.

The BNG input alignment files contained 232,780 single nucleotide polymorphisms (SNPs) for the 181 S. aureus isolates, and 123,338 SNPs for the 143 S. epidermidis isolates.

After scanning through all sequence reads, the alignment tool generates a file containing the collected information.

The alignment was then imported into Galaxy [ 78] to convert the MAF alignment file into a fasta file containing a single entry per strain.

Each gene was added to its corresponding Se-Al v2.0a11 http://evolve.zoo.ox.ac.uk file containing the alignment of multiple homologous gastropods sequences and the gene was demarcated on the genome based on the results of the alignment.

First of all GRCh37/hg19 was used as reference genome and alignment was performed against a bed file containing all regions corresponding to 316 genes sequenced.