Table 2 lists the numbers of mRNA sequences with alignments featuring A-content of 75% or higher in their 3' segments.
This pig-centered multiple alignment featured a coverage of 79% of the pig genome (Table 4 and Figure 4).
Through much of the game, the 49ers used a defensive alignment featuring four linemen, two linebackers and five defensive backs, a scheme they had used to some extent during the season, but one the Dolphins had not often seen - at least, not with the frequency the 49ers used it.
Despite the low genetic diversity, the unigenes aligned to the genes: Exp1, DGCR-like protein, HnRNP, RimL/acetyltransferase-domain protein, and Mo25-like protein displayed alignment variants featuring a possible lack or insertion of sequence traits in their CDS, coding sequences.
The remaining 177 sequences were added to the alignment featuring their closest BLAST match.
The Garden Courtyard, on the same alignment, features the Legacy Olive Tree and a seating area.
The most common alignment featured Klay Thompson, Draymond Green, Andre Iguodala, and Shaun Livingston alongside Cousins, a group that outscored opponents by more than ten points per 100 possessions across 67 minutes and featured Cousins heavily, to the tune of a 34.25% usage rate.
The 5.8S re-included ITS alignment featured 1,544 positions for 296 taxa (Alignment S5).
Prior to HMM generation, curated seed alignments (featuring removal of truncated or otherwise unacceptable sequences and trimming of extra domains) were manually generated.
Consistent with this hypothesis the cyanobacterial sequences are well separated from the other sequences in the tree and have a unique alignment feature; they all share a ~160 aa highly conserved C-terminal extension that is absent from all other sequences.
Sequence portions that were not represented among all samples, contained gaps, and/or contained ambiguity codes were removed using the "strip alignments" feature in Geneious (Fig. 1).
