The phrase "alignment falls" is grammatically correct and can be used in written English.
It can be used in contexts discussing the alignment of objects, ideas, or strategies, particularly when referring to a situation where alignment is lost or not achieved.
Example: "When the team failed to communicate effectively, the alignment falls apart, leading to confusion and missed deadlines."
Alternatives: "alignment fails" or "alignment breaks down".
This sequence alignment falls on the empirical threshold which distinguishes instances of significant similarity from uncertain alignments [41].
One approach could be to implement model partitioning by inferring among-site variation from the alignment, for example, using a mixture model in the context of a Bayesian framework, such as that developed by Lartillot and Philippe (2004) in PhyloBayes, where each site in the alignment falls into one of several classes characterized by its own set of frequencies (CAT model).
To account for slight positional variations in ncRNA predictions, and minor inaccuracies, gaps and small indels in the genomic alignments, we only infer orthology among similar ncRNA sequences across the genome alignment where the alignment falls within a range of ±80 nucleotides for snoRNAs and ±40 nucleotides for (the generally shorter) miRNAs across the entire alignment.
Ten of these residue positions show statistically significant evidence for positive selection, and two of them (sites with coordinates 49 and 50 in the protein alignment) fall within the known Tp1 epitope (Table 2, Fig. 1b).
In contrast, only 23.1% of quartets from the HIV-1B Albanian alignment fell in the center of the map with most of the quartets equally distributed in the three corners, which represent tree-like signal (Figure 2A, right panel).
To ensure that the endpoints of the optimal alignment fall on the N- and C-terminal of some blocks, H i, j may be re-initialized to S(a i, b j ) (replacing initialization to 0) if a i or b j is the first column in its respective block and traceback through H i, j is required to terminate at that position.
With this additional condition, the probability of scoring pairs that contain spurious alignments falls to less than 0.01%.
Only the Tetrahymena genome produced a match, which upon various CLUSTALW alignments falls outside of the Group B superclade from which the Myc and Max clades group.
Despite the high level of detection, more than 80% of the alignments fell outside the coding sequences.
For one of the eight BES pairs, 20 hits were detected with the V. vinifera genome and all of these intertwined alignments fell into the 'no-gapped' category for chromosome 2 of V. vinifera.
A majority of the genes in the 4-way alignments fell into one of the three categories, defined based on the microarray experiment: of the 990 genes, 99 (10%), 94 (9%) and 628 (63%) fell into the sexual, vegetative and constitutive gene categories, respectively.
