The phrase "alignment fails" is correct and usable in written English.
It can be used in contexts where there is a failure to achieve alignment, whether in ideas, strategies, or physical objects.
Example: "The project was delayed because the alignment fails between the teams led to miscommunication and confusion."
Alternatives: "misalignment occurs" or "alignment issues arise".
A prerequisite for a successful layout generation process is that all ligands are bound to the same active site and protein chain; otherwise no common residues can be found by the algorithm and the layout alignment fails.
Without surface normal information, the alignment fails for subtomograms at very low SNR of 0.1, resulting in average angluar alignment errors of at least 10°.
Generally, such approaches have to cope with the well-known fact that sequence alignment fails for sequence identities below 60% (Gardner et al., 2005).
Finally, level 3 coverage (which excludes coverage at levels 1 and 2) represent situations where the global alignment fails, but where the local alignment succeeds.
The choice of unpartitioned analysis instead of fully partitioned analysis was necessary because RAxML cannot run if any of its parts (within a partitioned alignment) fails to have all four nucleotides present.
DaliLite produces the worst RMSD, 22.1 Å, presumably because the protein structures that are compared do not have similar folds and consequently global alignment fails to superimpose the binding site residues.
Print a test page to verify that your printer is now properly aligned and no longer displays the "alignment failed" error message.
Attempts to optimise specificity by further editing the Cep290 protein alignment failed to produce significant improvements in homologue identification.
Detailed analysis of the sequence alignment failed to identify any compact region in the primary sequence that would be specific for one or the other isoform across the analysed plant families.
However, the aligner fails to find the proper alignment because it does not consider all possible alignments crossing splice junctions owing to the search complexity.
We found that 511 alignments failed the PTP test; therefore 4,805 were used for phylogenetic reconstruction analysis.
