Sentence examples for alignment extension from inspiring English sources

The microstructure evolution in terms of plane alignment, extension and cross-linking can be controlled by adjusting the synthesis conditions, such as growth temperature, N2 fraction in the discharge gas and ion energy.

Alignment extension: two APEs are connected if they share two proteins, one per species.

We compared methods for alignment extension using simulated data representing a mammalian gene family (Fig. 3a).

Alignment extension has interesting applications in the analyses of next-generation sequencing (NGS) data.

Widely used methods for alignment extension are based on profile representation of reference sequences.

Using these edge scores, we want to reward alignment extension and penalize both node duplication and edge indel.

By default BLAT is set to allow such alignment extensions, but MegaBLAST is not, resulting in the type of differences between alignments presented in Figure 3B.

Dynamic programming algorithms for alignment can accommodate missing restriction sites, false restriction sites, and missing fragments by allowing for different alignment extensions.

We reduced the number of ungapped alignment extensions by clustering subsequences in a database, and achieved a 2-fold acceleration in processing speed without a drop in search sensitivity.

Matching, or alignment, of query sequences to a known sequence database is typically done using BLAST [5] (which involves an HMM seed alignment, followed by less optimal, but faster, non-HMM seed-alignment extension).

If X is at the end of either read, the full-alignment extension is computed from X back across the anchor.