The phrase "alignment existing" is not standard in written English and may sound awkward.
It could be used in contexts discussing the presence of alignment in a specific situation or system, but it would typically require additional context for clarity.
Example: "The report highlights the alignment existing between the two departments in achieving their goals."
Alternatives: "alignment present" or "existing alignment".
Due to the problems caused by the uncertainty in alignment, existing tools for phylogenetic analysis based on multiple alignment could not be directly applied to the whole-genome comparison and phylogenomic studies of viruses.
To avoid the compute-expensive pairwise alignment, existing methods typically identify common kmers (de Bruijn graph based methods) or maximal substrings (overlap-layout-consensus based methods) among input reads, achieved using efficient data structures such as de Bruijn graphs [ 24, 25], suffix tree/array [ 29], and Burrows-Wheeler transformation [ 30].
Notably, the type-II staggered band alignments existing between any two of the constituents, as well as the efficient three-level transfer of electron-holes in unique g-C3N4/CeO2/ZnO ternary composites, leads to the robust separation of photoexcited charge carriers, as verified by its photocurrent increased by 8 times under visible light irradiation.
For one of the largest alignments existing today, containing 237,882 16S ribosomal RNAs, FastTree took less than a day and 5.8 GB of memory on a desktop computer.
Therefore, with the help of the sharing map, we can 'restore' these missed alignments from existing aligner's result.
Patterns may be aligned to existing alignment marks without exposing the writing area by using the alignment program AL.
When such alignments need to be extended, e.g. after new sequences become available, it may be preferable to keep the relative alignment of existing sequences intact and have the new sequences aligned to this reference alignment.
We compare the accuracy of alignment methods existing at the time of this work and the new alignment method on datasets simulated to encompass a broad range of genomic mutation types and rates, including inversion, gene gain, loss, and duplication.
We use IsoRankN to align the known eukaryotic PPI networks and find that it efficiently produces higher fidelity alignments than existing global multiple-alignment algorithms.
Up until now, this has simply meant broad alignment with existing EU regulations, and to keep in step with any future progressive EU directives.
In a total of 55,671 (97.14%) unitranscripts have at least one significant alignment to existing gene models in the NR database at an E-value cut-off of 1e-5.
