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MD 18 was subsequently assigned to old US 50 between Stevensville and Queenstown, following its own alignment except for a concurrency with US 50 and later US 301 over Kent Narrows.
In the case of U.S. Route 5, most of its non-expressway alignment except for the Berlin Turnpike has been given a commemorative designation by the Connecticut General Assembly over the years.
The programs were run using the default options for protein alignment, except for Mafft and Muscle.
All alignment tools were run with a single thread for alignment except for multi-thread tests.
The two tests detected sites that are conserved though all the alignment, except for the Q6L8R2_RAPSA allele.
All indels were removed from the DnaSP alignment except for the single nucleotide deletion that produced the euAP3 motif (see Additional file 5).
Similar(50)
Sites 54, 394, 407, 132 and 448 for instance show a conserved polarity throughout the alignment, excepted for the Q6L8R2_RAPSA allele, which shows polarity change for the five sites.
We defined a significant database hit as having an expectation value (E-value) below 1.0 × 10-15 for all sequence alignments, except for blastx against PDB where 1.0 × 10-10 was used.
Even when run on a dedicated machine with 256 GB, all alignment methods except for MAFFT-PartTree and ClustalW-quicktree failed to align one or more datasets.
The reconstruction of ancestral sequence graphs for a reference alignment is not different from the de novo alignment except that the alignment solution is read from the input data.
For 88% of the transcripts, we obtained an alignment with a BAC sequence, which, excepted for five transcripts, was localized on pig chromosomes allowing 33 more transcripts to be localized on chromosomes.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com