Sentence examples for alignment encompassed from inspiring English sources

The sequence alignment encompassed >97% of the chameleon mtDNA (∼17,000 bp).

The final alignment encompassed 20 taxa and 13, 184 nucleotide sites, of which 3, 882 sites were parsimony informative.

Overlap between query and subject sequences was scored only when the alignment encompassed up to the last nucleotide at the 5' or 3' end of the sequences.

The final alignment encompassed 44 sequences and spanned 1467 positions, comprising of 1420 alignment patterns and 14.9% gaps and undetermined positions (Additional file 14).

Multiple alignment encompassing database and PCR sequences were trimmed at the same length before phylogenetic analysis.

The signal peptide region appears to have been considered in previous gene-wide or HA1-wide calculations of d N / d S (e.g. [ 22, 28]), and the values we have reported across the alignment encompass the signal peptide and HA1.

At the nucleotide level the final alignments encompassed respectively for the Ig2, Ig3 and Ig7 exons, 106, 290 and 219 sequences; 197, 147 and 328 alignment patterns; and 22%, 18% and 21% gaps and completely undetermined positions (Additional files 16, 17 and17).

In this case, at the nucleotide level the final alignments encompassed respectively for the Ig2, Ig3 and Ig7 exons, 25, 99 and 66 sequences; 148, 128 and 296 alignment patterns; and 6.8%, 8.9% and 0.6% gaps and completely undetermined positions (Additional files 19, 20 and 21).

They also provided alignments encompassing LTRs of most of beta-, gamma- and lentiretroviruslike LTRs, presenting further insight into the common LTR structure of these genera.

A threshold of E<10-80yielded E<10-80yieldeds encompassing a total of 1.2414bp from ealignmentss, whencompassingshold of E<10-20 yielded 2820 alignmentotalcofpassing a total of 1.25 Mbp.

Network alignment typically encompasses two algorithmic components: node cost function (NCF), which measures similarities between nodes in different networks, and alignment strategy (AS), which uses these similarities to rapidly identify high-scoring alignments.