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This progressive alignment efficiently aligns multiple sequences with reasonable accuracy.
rpsA sequence and alignment efficiently identified clinical isolates representing 8 mycobacterial species.
In addition to these standard pairwise algorithms, the module includes the Guan Uberbacher algorithm to perform global sequence alignment efficiently using only linear memory (Guan and Uberbacher, 1996).
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Based on approximately maximum-likelihood method, FastTree2 was designed to process huge multiple sequence alignments efficiently, using reasonable amount of memory without sacrificing the quality of phylogenetic trees.
Note that we can compute the optimal local and freeshift alignments efficiently using a modified version of the Gotoh algorithm, as suggested by Smith and Waterman (1981).
The key role of vacuum in this approach enables high-aspect-ratio (10 to 22) AuNR alignment and efficiently facilitates large-area alignment.
Cross-species alignments are efficiently calculated over protein space using BLAST software.
Consensus sequences generated from multiple read alignments can efficiently correct single read errors.
However, applying a unique mapping strategy does not exclude false alignments as efficiently as filtering with mapping qualities [ 81].
VISTA pipeline uses an alignment algorithm that efficiently combines global and local alignment techniques [ 20].
A biological challenge is that a network alignment algorithm must efficiently and effectively identify biologically conserved functions.
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