Sentence examples for alignment edit from inspiring English sources

Furthermore, the alignment edit distance could be relaxed slightly (option –n 0.03) with no apparent increase in spurious hits.

The concatenated DNA sequences of these 636 genes were aligned using MAFFT [54] and the resulting alignment edited using Gblocks [55] to remove any gaps.

Amino acids were aligned with ClustalW [18] and this initial alignment edited manually in MacClade 4.08 (included as supporting File S1) [19].

For phylogenetic analysis, protein sequences were aligned using C LUSTALX 1.83 [ 33], the alignment edited with G ENEDOC 2.6 [ 34] and the phylogenetic analysis performed in M EGA 3.1 [ 35].

Additional sequences were selected in the database and exported to the sequence alignment program Bioedit [46] for additional alignment editing.

The cladogram estimation was performed under a 95% connection limit and gaps were treated as a 5th state with the alignment edited so that each indel was considered a single mutation.

The parenthesized numbers show the change of sequence counts after alignment editing.

In no case did we observe a change in topology as a result of alignment editing.

This method makes it possible to apply a manual-quality alignment editing to large-scale phylogenetic studies.

Unlike the previous analysis [ 2], in order not to introduce subjective bias, manual alignment editing was minimized.

Alignment edits can be undone, and any number of independent views may be created in tabs or as separate windows opened on the same alignment.