The phrase "alignment divergence" is correct and usable in written English.
It can be used in contexts discussing differences or discrepancies in alignment, often in fields like project management, psychology, or technology.
Example: "The alignment divergence between the two teams led to misunderstandings and delays in the project timeline."
Alternatives: "misalignment" or "discrepancy in alignment".
We would be diverging our alignment at precisely the same rate as we would be aligning our divergence, so that our alignment-divergence alignment mechanisms would diverge and align perfectly.
Even now that negotiations are in their final stages, the dilemma of a post-Brexit trajectory – alignment or divergence – is unresolved.
After removal of additional indel positions, the final alignment for divergence age estimations comprised 1,479 bp.
These results are provided in a tabular view: the columns headers of the table are ID of the gene candidates, links towards fasta format alignment and divergence profile, alignment length, GC content, introns number and functional annotation of the candidate.
After removing additional indels, which were present in outgroup taxa, the final alignment for divergence age estimations comprised 2,023 bp.
The gene phylogeny generated from this alignment reflected divergence of PHYA, PHYB, PHYC and PHYE as a result of speciation (nodes 1A, 1B, 1C and 1E, respectively) and gene duplication (nodes 2 and 3).
Following the alignment, sequence divergence for every possible human-fish pair was estimated in EverEST as the observed proportion of amino acid sites at which the two sequences under comparison were different (Poisson correction).
Each panel in figure 4 represents a different MSAM and shows the relationship between MSA error, characterized by average MSA distance from the true alignment, and divergence estimate error, taken to be the average sum of errors across individual branches in the phylogenetic tree for amino acid sequences and nucleotide sequences.
JAS designed this study, sequenced BACs, annotated BACs, designed primers for mapping of BACs, performed sequence alignments and divergence estimates, carried out all of the batch sequence assemblies and quantification of those assemblies and drafted the manuscript.
