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They were easily detected in alignments because their sequences originated from a mixture of the sequences of two different, true variants occurring in the same sample.
Seven genes or gene fragments were detected in A. queenslandica that were incorporated to generate final alignments.
As such, we advocate an approach whereby once measurement non-invariance (under full, classical partial or with alignment framework) is detected, in-depth analyses are necessary to locate its source.
Through this alignment, QTL detected in different studies for economically important traits were found to co-locate [ 57]; providing supporting evidence to substantiate the biological basis of the observed marker-trait association [ 7, 8].
Only subtle alignments could be detected in the immediate vicinity of the ablated zone in large-scale lacerations, but no alignment over several cell files was observed.
Moreover, no inconsistent positions were detected in alignments, which were assembled from overlapping sequences.
The same 6-bp inversion polymorphism was detected in alignments of multiple Festuca and Lolium sequences from GenBank.
This track displays conserved sequences detected in alignments of 30 vertebrate sequences using phastCons from the PHAST package [ 36]; note that the phastConsElement30way default parameters are tuned to detect the top 5% most-conserved sequences in the genome.
To more comprehensively annotate human and mouse ancestry, we also used ancestral sequence reconstruction and transitivity in addition to directly aligning sequences to identify homologies not detected in the multiple alignment.
No single sequence blocks that could cover adjacent ends of blocks syntenic between FS4401 and Jeju were detected in the alignment with tobacco mtDNA except for two syntenic sequence block that were specific to the alignment between Jeju and tobacco.
No SNP's were detected in the alignment of the HH and hh ITGAV sequences.
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