Sentence examples for alignment detected from inspiring English sources

Frequency Analysis of Sequence Data (FASD[8]), a program that predicts taxonomy based on nucleotide frequency and order rather than sequence alignment, detected new sequences representing the S1, S2, S3 and S4 segments (Figure 1) that comprised an additional 11.8% of the final viral genome assembly.

This alignment detected 33,784 sequence variants, including 1,520 short indels, scattered over 12,068 contigs ('CcRAD1' dataset, Additional file 5).

In accordance, PJ-34 prevented the bipolar clustering of supernumerary centrosomes in these cells, causing multipolar spindles and aberrant chromosomes alignment detected within 18 hours after PJ-34 application.

To verify that PSI-BLAST hits from CBO0798 to CNTs sequences were not due to composition, all asparagine residues were removed from CBO0798 and the top-scoring alignment detected via PSI-BLAST (C. butyricum BoNT/E), and permutation reshuffling tests were repeated using the altered sequences.

BLAST alignments detected a 16-bp conserved sequence within 2 3 bp of the translation start sites of MTT1, MTT3 and MTT5 (Figs. 1 and 2).

While each subfamily was not found to detect all other subfamilies, scans with both the XPO1 and XPO5 alignments detected members of all 15 subfamilies as top hits (data not shown), supporting the hypothesis of a monophyletic origin for KAP-β.

We also revisited a structural alignment performed using the ProSup program to determine whether using LGA with a point of representation at the beta carbon would confirm a putative mis-alignment detected using the beta-carbon post-analysis filter of Lackner et al. (2000).

All alignments detected to be under positive selection at the codon level were curated manually for potential alignment errors.

All the read alignments detected by SMALT are piled up to the reference genome using SAMtools (Li et al., 2009).

As expected, even though small window sizes (less than ten in Fig. 5) provide more sensitive results, they also make true alignments indistinguishable from noise and reduce the number of correct alignments detected; on the other hand, larger window sizes improve the signal-to-noise ratio but result in a drop in sensitivity.

This clustering distance was based on the 4.3 kb length of EAV-HP genome, indicating that any subsequent EAV-HP LTR alignments detected within 5 kb of one-another using BLAT on the chicken reference genome could reasonably be considered to be the result of a single integration.