Exact(2)
For instance in the transitive alignment depicted in Figure 7 there are 91 matches and 12 transitions (plus 16 transversions and 102 gaps).
CrPrxQ lacks negative charges at position 118, 119, 135 (numbers relative to the alignment depicted in Fig. 8A) and positive charges at position 138, 139, 156, 175 and 200.
Similar(58)
The positions of splice sites were compared relative to the amino acid positions in the protein alignments depicted in fig. 1A, 5A, 8A, 9A and 14A.
The database alignment is depicted in Figure 1.
A profiling study of NCBI-BLAST for protein alignment is depicted in Figure 1.
The amino acid translation and alignment is depicted in Fig. S1.
The sample mapping pair provided by the CAMPways alignment is depicted in Figure 2. The atc reactions R01374 [ d-phenylalanine: acceptor oxidoreductase (deaminating)] and R01582 (d-phenylalanine: 2-oxoglutarate aminotransferase) are together mapped to reaction R01374 of eco.
A large alignment of 1002 primary σ subunit sequences has been generated (included as Supplementary file 1), and a sub-alignment is depicted in Figure 1 figure supplement 3. Specific information on the conservation of RNAP β′ and σA residues is also tabulated in Supplementary files 2 and 3. e) The authors should reconsider the use of the term 'σ-finger'.
When the effective concentration becomes less than the lower isotropic-nematic binodal, the nematic domain becomes unstable and melts, which is accompanied by a de-alignment, as depicted in Fig. 2 in stage (III).
Although phylogenetic analysis based on the 16S rDNA sequence usually separates Streptomyces and Kitasatospora species into distinct sister groups, the results sometimes depend on the choice of the outgroup or the region used for the alignment, depicting the difficulties in determining correct taxonomic relationships only from the nucleotide sequences of rDNA.
An intermediate step in the optimization process of the global range alignment method is depicted in Figure 20(b).
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