Sentence examples for alignment denotes from inspiring English sources

- Length of alignment denotes number of aligned residues The table shows the alignment accuracy by RMSD, the length of alignment, and coverage, which is the fraction of the aligned residues in the target protein.

Particular attention is paid to how this interplay fostered varying degrees of frame alignment, denoting the extent to which particular frames are congruent with those enacted by various social actors, and how this affected organisational action.

The significance of differences in folding energies depends on the number of sequences in the input alignment, denoted by n, and on sequence variation.

To control for nucleotide compositional variation in the context of a RadConsAA analysis, we computed the empirical frequencies of A, C, G, and T at the third coding positions of the alignment (denoted as πA, πc, πG, and πT, respectively).

Non-alignment denotes a sense of negativity as the organization has been defined as something that is not.

Symbols below the alignments denote secondary structure elements assigned using PDBsum (Laskowski et al., 1997 ) based on the crystal structures of yPrp3CTF (this study), Bos taurus AcyP (PDB ID 2ACY) (Thunnissen et al., 1997 ) and the R. sphaeroides BLUF domain (PDB ID 2BYC) (Jung et al., 2005 ).

Since we verified that the topical alignment, which denotes a homophily phenomenon between users [64], is not purely due to assortative patterns, we can ascribe this phenomenon to selection or to social influence.

This paper presents a novel global network alignment algorithm, denoted as HubAlign, to align two PPI networks using both network topology and sequence homology information, based upon the observation that topologically and functionally important proteins (such as hubs and bottlenecks) in a PPI network are more conserved and thus, shall be aligned.

Let the set of nucleotides at position i in the alignment be denoted q i and the nucleotide in the ancestor at position i be denoted α i.

Conserved amino-acid positions in the protein alignment are denoted with '*' (b) Representative 3D-structural model, using I-TASSER prediction server, of the 37-F6 caproteinotein compared with the nearest viral capsid proteins: the Tara Contig 67SUR_4106 and viruses from SAGs AAA160-P02 (Flandbacteria) and AAA164-I21 (Verrucomicrobia).

The score of the obtained sequence alignment is denoted by s c o r e P a t h p, p′).