The phrase "alignment defined in" is correct and usable in written English.
It can be used when discussing specific criteria or parameters that establish how something is aligned or organized within a particular context.
Example: "The alignment defined in the project guidelines ensures that all team members are on the same page regarding their responsibilities."
Alternatives: "alignment specified in" or "alignment outlined in".
BLAST results were parsed using PERL scripts in order to select only those orthologs satisfying alignment criteria defined in literature [ 14]: alignment extension over 70% and e-value cut-off 10-5.
The most biologically relevant alignment (defined with respect to structural information in standard datasets) is rarely the one having the highest possible score (Sierk et al., 2010).
Nucleotide sequences were analysed and interpreted using Sequencher (Version 5.1, Gene Codes Corporation) and aligned relative to the rCRS [5] following phylogenetic alignment rules defined in [6].
VAF is the vertical alignment factor defined in Eq. 5, and σ VAF is its respective standard deviation.
The angle between these 2 lines was measured with a digital angle ruler, and alignment was defined in degrees.
Current efforts to integrate ontologies include: 1) merging – merge several ontologies into a single one; 2) mapping – relate similar concepts or relationships across different ontologies, resulting in a virtual integration; and 3) alignment – define relationships between terms in different ontologies.
The quality of an alignment is usually defined in terms of two possibly conflicting measures; homological similarity and topological similarity.
The distance between the modes of the forward and reverse peaks in the alignments, defined as ' d', was 152 bp for the LRH-1 ChIP-seq data.
A Humanitarian Performance Monitoring System has been developed to help country offices effectively monitor performance against response targets defined in alignment with the CCCs.
Febrile episodes were defined in alignment with the WHO case definition 24 (e.g., temperature ≥ 38°C on at least 2 consecutive days with a suspicion of dengue disease).
