The phrase "alignment database" is correct and usable in written English.
It can be used in contexts related to data management, software development, or scientific research where alignment of data or information is necessary.
Example: "The researchers updated the alignment database to ensure that all sequences were accurately matched for the analysis."
Alternatives: "synchronization database" or "matching database".
Unique sequences were trimmed to overlap a minimum of 200 base pairs and aligned against the SILVA reference alignment database (Pruesse et al.2007) using the NAST-aligner (DeSantis et al.2006).2006
Using alignment database and Bowtie, SpliceSeq aligns reads from RNA-Seq data to a reference collection of splice variants [ 19, 20].
The STAP ss-rRNA aligner takes one ss-rRNA sequence as the input and outputs a gapped sequence that aligned to the user's chosen alignment database.
High-quality reads from each quadrant were aligned in MOTHUR platform [23] using the Greengenes alignment database available at the MOTHUR website as a template.
And The alignment database was UniRef100 (Release: 15.9) which contains 9,385,165 reference clusters.
The amino acid position mutative function, which is the foundational equation of CMCA measuring the mutation of a residue at a position, is derived from the MSA (multiple structure alignment) database of protein evolutionary family.
Results show that it outperforms the state-of-the-art cascaded regression-based methods on multiple in-the-wild face alignment databases.
There are a number of other protein alignment databases for example HOMSTRAD [ 14], OXBench [ 15], PREFAB [ 16], SABmark [ 17], or SMART [ 18].
DoSA is complementary to existing structural alignment databases, and it aims at identifying genuine conformationally similar substructures in regions that are otherwise tagged as structurally variable in these databases.
The results of our benchmark on the global alignment databases are listed in the Tables 6, 7 for BALIBASE 3 and in Tables 8, 9 for core blocks of BRAliBase II.
Command-line parameters passed via Java Webstart provides a route for the JVD to be launched from the JVL or directly by a bioinformatics web application, but it can also access public sequence, structure and alignment databases with WSDbFetch (Pillai et al., 2005) to retrieve or transfer database accessions and annotation from their records.
