Sentence examples for alignment data with from inspiring English sources

Both predictions were analysed by EVidenceModeler [ 33], integrating BLASTp protein alignment data with C. reinhardtii.

Dot-plot viewers are an alternative way of visualizing whole genome alignment data with a particular emphasis on large-scale changes in synteny and indel detection.

Because many minor forms are only weakly supported in the ESTs (as described above), it is important to eliminate ambiguous alignments, such as from ESTs that map onto multiple genomic locations, so that users do not confuse flawed alignments data with bona fide examples of rare variants.

There will soon be many more orthologous At CNSs when usefully diverged Brassicaceae genomes are sequenced and aligned, and when CNSs obtained from multiple alignment data are merged with our pairwise CNS list.

An iterative search (PSI-BLAST) with this region (exons 16 - 23) alone produced an alignment (data not shown), with a sequence fragment of zebrafish (Danio rerio) periostin marked by a highly conserved 5-fold 13-amino acid repeat [ 39], covering exons 16 - 20 of the human periostin query.

With the alignment data, domain identification, and with the knowledge that ski7 has only previously been found in some Saccharomyces species [ 62], we believe that the gene previously identified at ski7 is actually hbs1.

The alignment data was coordinated with HXB2-LAI-IIIB.

The resulting alignment data were filtered with the delta-filter program of MUMmer.

Networks generated using our previous genomic mapping alignment data were compared with the networks generated using TargetScan predictions.

Partial Hirudo protein sequences were extracted from the alignment data and annotated with their corresponding GO categories.

The input for all programs was a BAM file [ 24] with alignment data from BWA [ 31] and GATK IndelRealigner [ 14, 25].