Sentence examples for alignment data to from inspiring English sources
The module collects and transmits alignment data to the computer as the patient walks.
Model fitting (3): we fitted the checked alignment data to the H0, H1, H2 and de novo topologies using our modified build of the aaml program in PAML 4.4 (ref. 45) under the WAG + γ model with estimated amino acid frequencies.
We used simulated alignment data to guide the design of our ncRNA discovery pipeline and estimate the corresponding false-positive rate.
We then used the alignment data to map the human miRNA genes to the rhesus and mouse genomes with the LiftOver utility [42] to obtain the genome coordinates of potential miRNA genes in the two genomes.
The modENCODE DCC requires all RNA-seq alignment data to be deposited in this format, and encourages other NGS experiments to be deposited in this format as well.
In order to assess the alignment's tree like structure, likelihood mapping was carried out and showed the sequence alignment data to have strong phylogenetic signal.
To test the alignment data and to identify genes with differential expression of alternative transcripts in human renal tissue, transcript levels for two genes were first tested based on the newly defined transcript-specific probe sets.
The genome browser is tightly integrated into GensearchNGS, allowing the user to easily visualize the alignment data belonging to features of the sample.
Importantly, since NGS technologies and protocols are rapidly evolving, with constantly changing steps ranging from sample preparation to data processing software updates, it is important to enable researchers to routinely assess the quality of sequencing and alignment data prior to downstream analyses.
IGV uses color and transparency to highlight interesting events in the alignment data and to visually deemphasize others in the coverage chart, at the read level and for individual bases.
Next, the CAGE software [ 19] uses a combinatorial approach to identify all pairwise orthologs in the alignment data, according to the definition of orthology in [ 22, 23]; its output is a subset of the inter-species alignments, also in MAF format.
