The phrase "alignment data sets" is correct and usable in written English.
It can be used in contexts related to data analysis, machine learning, or research where data sets are being aligned for comparison or integration.
Example: "The researchers compiled several alignment data sets to improve the accuracy of their model predictions."
Alternatives: "aligned data collections" or "synchronized data sets".
The analysis of 100 bootstrap resamples of the alignment data sets was performed using PHYLIP.
RNAaliduplex is designed to facility the search for conserved RNA-RNA interaction sites in large alignment data sets.
For each of the eutherian mammal alignment data sets, phylogenetic trees were constructed using raxml version 7.0.4 (Stamatakis 2006; Stamatakis et al. 2008).
For both the LSUrRNA and SSUrRNA sequence alignment data sets, we used a neighborhood of 50 nt (and 100 nt) in fitting the loess curve.
Third, we conducted a principal components analysis of the amino acid frequency matrix at all sites of the 21 protein alignment data sets and obtained four major classes (or profiles) of amino acid frequency distribution at sites.
In general, we have observed that various methods gave expected results (confidence sets larger for WLS than for GLS, and closer to SH set size) when there was a large number of site patterns in the alignment (data sets 1, 6, 9 and 12), even when the percent of unresolved quartets was quite high (data set 1).
Each alignment data set was then filtered for pairs of reads with only one unambiguous alignment and convergent orientation (inward-facing read pairs).
To investigate the possibility of tRNA posttranscriptional modifications, we used the non-stringent small RNA alignment data set (defined above) and used WebLogo to characterize nucleotide mismatches [ 60].
Multiple alignment program, Clustalw, was run on each of the datasets and the regions corresponding to the DCX motifs were extracted, resulting in three multiple alignments (data sets are deposited in supplementary data 1).
