The phrase "alignment data from" is correct and usable in written English.
It can be used when referring to data that is related to or derived from a specific source or context, particularly in technical or analytical discussions.
Example: "The alignment data from the recent study indicates a significant correlation between the variables."
Alternatives: "data aligned with" or "data sourced from".
The resulting alignment data from TopHat2 were then fed into Cufflinks (v 2.0.2) to assemble aligned RNA-Seq reads into transcripts for each rat individually.
The ancestral allele of each site was assigned using chimpanzee human alignment data from Ensembl.
The alignment data from the R and S are available at NCBI Sequence Read Archive SRAA) under accession SRA056409.
Merged alignment data from several sequencing platforms increased mapped read depth and thus more SNPs can be identified.
MGAviewer fetches alignment data from a user's local computer or from a web server on demand via AJAX.
SiPhy [ 26] was used to detect bases under selection using multiple alignment data from 29 mammal genomes; larger is the score, more conserved is the site.
Suppose we have paired-end RNA-Seq alignment data for multiple samples from each of two groups (at least two samples per group).
The transcriptional start site was identified by direct visualisation of RNA-seq alignment data retrieved from the NCBI Sequence Read Archive (SRA, http://www.ncbi.nlm.nih.gov/Traces/sra/).nih.gov/Traces/sra/
The protein sequence alignment data (available from: http://www.uniprot.org) showed that PRR14 protein sequences are highly conserved during the evolution and the protein sequences between human and mouse share over 72% similarity and 77% positive (Supplementary Figure S1A).
Given a multiple sequence alignment data d from 3 taxa at v homologous sites, i.e. d ∈ {Y, R}3 × v, the likelihood function over the tree space T k is simplified from (2) as follows: (5) l d (t k ) = ∏ q = 1 v l d ·, q (t k ) = ∏ i = 0 7 (l i (t k ) ) c i, where l i (k t) is the likelihood of the the i-th site pattern as in (4) and c i is the count of sites with pattern i.
Therefore, the multiple sequence alignment data d from three taxa evolving under Model 1 can be summarized by the minimal sufficient site pattern counts (c xxx, c xxy, c yxx, c xyx):= (c 0 + c 1, c 2 + c 3, c 4 + c 5, c 6 + c 7), which simplifies (5) to: (7) l d (t k ) = ∏ q = 1 v l d ·, q (t k ) = ∏ i = 0 7 (l i (t k ) ) c i = ∏ s = xxx, xxy, yxx, xyx (l s (t k ) ) c s.
