The phrase "alignment currently" is correct and usable in written English.
It can be used when discussing the present state or status of alignment in a particular context, such as in business, technology, or personal goals.
Example: "The alignment currently between our departments is crucial for the success of the project."
Alternatives: "current alignment" or "alignment at present".
The greengenes aligner currently implements blastn to carryout pairwise alignments.
During the 1960s and 1970s, M-14 was moved to the freeway alignment it currently uses; sections of the former route are still maintained by the Michigan Department of Transportation MDOTT) as unsigned highways.
The local alignment algorithm currently used in a BLASTn search should be improved by substituting a global alignment algorithm, such as the one used in the Barcode of Life Data System (BOLD [21], that is more efficient at aligning sequences with significant length variation and therefore more successful at matching them within a known sequence database.
The alignment of currently non-compatible ontologies to the GO is one avenue for its curation or the process of developing and contributing content or adding value to digital knowledge representation systems such as databases or ontologies.
A comprehensive amino acid alignment of currently available complete N protein ORFs indicated that the 4 residues that distinguish between genotype M and B viruses are almost all located in the COOH-terminus (Table 3).
Note that Spaln is one of the most accurate alignment tools currently available [ 33], and reportedly outperforms tools that are used for annotation in major databases, such as NCBI [ 34] or Ensembl [ 35].
The non-redundant sequences of each protein from both the animal and human hosts of the virus are then merged for a co-alignment by use of a local copy of MAFFT (obtained from http://mafft.cbrc.jp/alignment/software/); MAFFT is one of the most accurate multiple sequence alignment methods currently available [ 14].
The unbranched nature of matches is a key step in model simplification: as long as matches are unbranched, extending an alignment that currently includes (v, j, d) is a fixed time operation, since the next state is uniquely defined and it corresponds to known changes in the values of j and d.
These alignments are currently used to help visualize the exon-intron structure of the genes.
In this work, we begin by examining the foundations of how structural alignments are currently assessed.
