Sentence examples for alignment created by from inspiring English sources

Figure 1 shows an example of an overextended alignment created by BLASTP.

Putative gene relationships and sequence data were analyzed by using a multiple sequence alignment created by using Clustal W version 1.82 (18 ).

Each record in the Manually Curated PWM section of the database comprises a TFBS training set (alignment) created by an expert curator using published experimental data and manual in silico analyses.

To analyse the evolutionary relationships between STs on sequence level, the seven sequences for the alleles of each ST were concatenated and a multiple alignment created by ClustalX [ 18].

Besides HHpred and HHalign, HHsenser may be useful here as it allows intermediate HMM-HMM hits in the same framework to cover greater distances in sequence space (e.g. if starting alignment created by HHpred for a query has too few sequences after removing redundancy).

The focus is on rock alignments created by the Hohokam culture in the semi-arid environment of the US Southwest.

We compiled the concatenated protein alignments created by PhyloSift to create maximum likelihood phylogenetic trees using RAxML v.7.2.861 using the "rapid bootstrap" method with 100 bootstraps and the "PROTGAMMAAUTO" model of rate heterogeneity.

For the whole ITS analyses, the alignments created by Clustal W and SATé were used for further analyses without manual adjustment except for some trimming of highly gapped ends where necessary.

We ran the algorithms on the full alignment and on two smaller alignments created by randomly sampling 20000 and 40000 sequences from the large alignment.

For this program, we used alignments created by clustalW [ 56] (cDNA) and by CHAOS with DIALIGN [ 59] (genomic DNA) as the input.

Alignments created by BLOSUM62, most often between sequences with higher identity (>33%), can extend past the boundaries of the homologous domain to include non-homologous sequence (Fig. 2).