The phrase "alignment covers" is correct and usable in written English.
It can be used in contexts related to ensuring that different elements or components are properly aligned or coordinated, such as in design, engineering, or project management.
Example: "The alignment covers for the machinery need to be checked to ensure everything is functioning properly."
Alternatives: "alignment shields" or "alignment panels".
Our alignment covers approximately 60% of the A. nidulans genome; hence we are only scanning 60% of the genome in our study.
If the subject is over 40% identical to the query and the alignment covers at least 80% of the subject, then the subject is clustered with the query, and any homology relations involving the subject will be ignored.
Our alignment covers >99.5% of the sequenced GT1 reference, but because gaps remain in the completed sequence, parts of the genome might be absent from our analyses.
This hit retains 61%% sequence identity and the alignment covers 90%% of the length of the query (alignments are shown in Additional file 23: Figure S13).
This is because our model of INT alignment covers the 3 subdomains described in the amino acidic architecture of a conventional INT domain.
Our polymorphism and divergence data cover a largely overlapping part of the exome: 89.2% of the exome is fully sequenced in all 42 CG samples, whereas the human chimp alignment covers 96.3% of the exome, resulting in 86.8% of the exome covered by both datasets.
Protein sequences were considered paralogous if their alignment had an E-value less than or equal to 1e-5 and the alignment covered 70% or more of one of the aligned proteins.
Gene duplication events were defined based on the following three criteria: (a) the alignment covered >80%% of the longer gene; (b) the aligned region had an identity >80%%; and (c) only one duplication event was counted for the tightly linked genes [ 38, 60].
We call N the total length of the alignment covered by human and mouse ESEs, i.e., the number of aligned nucleotides labelled as H and M in Figure 8.
the percentage of the alignment covered by the blocks.
A hit was considered significant if the alignment covered at least 50% of both sequences, and contained at least 50% identities [71].
