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Our work does not impose any alignment constraints between virtual topologies and physical topologies.
To solve this problem, we modified the Qmax by changing the possible alignment constraints from Fig. 2 a, b to obtain a new measure, called Dmax [21].
Our new algorithm uses a particular data structure that takes into account memory alignment constraints and avoids gather/scatter instructions that can significantly affect vectorization performances on current CPUs.
However, as shown in [32], due to the possible alignment constraints in the Qmax (see Fig. 2 a), it fails to identify the cover versions when the CRP includes such phenomenon as shown in Fig. 3 a, where there is serious short disruption of diagonal.
Fig. 2 Possible alignment constraints in the a Qmax and b Dmax Fig. 3 a The CRP for the song "Addicted to Love" as performed by Tina Turner and Robert Palmer and the corresponding cumulative matrix obtained by the b Qmax and c Dmax.
The translational spring enforces the constraint that the endpoints of adjacent segments should be coincident, while a weighted sum of the torques from the translational spring and the torsional spring are used to approximate the bending rigidity of the filament (henceforce the endpoint and angular alignment constraints, respectively).
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The system uses music scores as prior information but relaxes the alignment constraint between score and audio.
The objectives of this study were to develop a probabilistic wear prediction model capable of incorporating uncertainty in component alignment, constraint and environmental conditions, to compare computational predictions with experimental results from a knee wear simulator, and to identify the most significant parameters affecting predicted wear performance during simulated gait.
In particular, an alignment constraint was used for the Jaccard clustering alone because the default and recommended settings for OrthoMCL do not include an alignment constraint (see http://orthomcl.cbil.upenn.edu/ORTHOMCL/).upenn.edu/ORTHOMCL/
At 202 amino acids, Met14p is less than half the length of the other OrthoMCL family members and therefore fails to satisfy the 50% alignment constraint used in the Jaccard clustering algorithm.
SILIX software can cluster two or more DNA sequences taking into account the alignment coverage constraints and their sequence identity (see Materials and Methods).
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