Sentence examples for alignment conservation from inspiring English sources

Three measures were computed: (i) alignment conservation annotation measures the number of conserved physicochemical properties for each column of the alignment applying the approach used in the AMAS method [ 27]; (ii) alignment quality annotation is a measure of the likelihood of observing mutations (if any) in a particular column of the alignment.

The alignment conservation annotation is based on the AMAS method of multiple sequence alignment analysis[43].

Alignments were edited with the JalView [59] editor which allows the user to visualize alignment conservation via various residue coloring schemes as well as conservation and consensus plots.

Multiple alignment conservation scores can be found in Additional file 1.

Qualitatively, the results (supplementary figs. 5 and 6, Supplementary Material online) are not affected by degree of alignment conservation.

Proportion of identical sites in a gene family alignment was considered as a proxy for alignment conservation (gaps were treated as missing data).

At present, this browser has several mapping and sequencing tracks (G + C content, GC, and AT skew), gene-related tracks (predicted genes and transcriptional units), and comparative genomic tracks (pairwise and multiple alignments, conservation scores).

In this study, we identified a number of sequence and structure-based features that can distinguish known ncRNAs from their di-shuffled versions, which do not rely on a priori knowledge of sequence alignments, conservation with closely related organisms, or structural conservation.

The protein-alignments conservation ranged from 20%to10000% with an average of 65.3%, indicating that some RNAseq only transcripts probably correspond to paralogs of predicted sequences, whereas a large number of them share only low sequence identity and thus likely encode proteins not represented in the predicted datasets.

It shows the "Vertebrate Multiz Alignment & Conservation (44 Species)" track of GB, which provides sequence conservation level within synthetic chromosome regions as calculated by PhastCons algorithm.

To obtain clues about possible function of the intronic TARs using sequence similarity to other mammalian genes, we investigated whether unannotated TARs corresponded to any highly conserved region using the 30-Way Multiz Alignment & Conservation track in UCSC Genome Browser [ 44].