If any pairwise overlap alignments conflict with the current multiple alignment graph, corrective algorithms use the conflicting alignments to either ignore the new pairwise overlap (if the graph is more consistent) or to correct the constructed multiple alignment (if the new pairwise overlap identifies a misalignment in the graph).
Participants' attitudes reflected their recognition (or rejection) of specific purposes, the briefings' perceived effectiveness in serving these purposes, and the briefings' perceived alignment (or conflict) with other priorities.
Inter-organisational structures that address geographical interrelatedness and, hence, broader stakeholder involvement were associated with uncertain and time-consuming transactions, because of extensive negotiations regarding the alignment of conflicting interests and the crossing of geographical and administrative boundaries.
Third, dichotomising the left leads to mistaken expectations about international alignments and conflicts.
The absurdities inherent in the right/wrong left dichotomy are exposed when observers use such crude stereotypes to explain international alignments or conflicts.
Therefore, Hybrid Scaffold would only report the conflicting alignment.
First, in vivo recombination between the gene copies may give rise to mosaic sequences, which can give inconsistent phylogenies, where different parts of the alignment will reflect conflicting topologies.
The second is in forming the ideal mix of relations on the team, including: trade-offs between familiarity and quality, role expectations and alignment, and handling role conflict.
Conflicting alignments can result in ambiguous placement of an experimental map on a database of in silico maps, but condition (a) could be relaxed in some cases, for example, when experimental maps are known to overlap multiple in silico maps in the same region.
Because the set of Sanger ESTs was not exhaustive, we attempted to identify well-assembled ESTs from the subset with conflicting alignments by comparing them to the NR protein database to determine whether there is a known protein that covered the full length of the Illumina EST.
