Sentence examples for alignment confirmation from inspiring English sources

In one instance Symap predicted a putative syntenic region between cbr1 and peach scaffold 1 where there is no sequence alignment confirmation (Fig.  3a).

DOGMA was used to demarcate protein coding and rRNA sequences (Wyman et al. 2004) with alignment confirmation performed with known arthropod mitochondrial sequences when necessary.

BioEdit (Hall 1999) was used for manual alignment and confirmation of annotations.

Using ClustalW alignment and PCR confirmation, we found a 282 bp deletion in the region of ndhA intron using the Sanger platform and a 152 bp insertion in the inverted repeats using the Illumina MiSeq platform (Additional file 2: Figure S1 and Additional file 3: Figure S2).

Clean-up of sample sets involved preliminary alignment to check for sequence instability or misalignments, as well as confirmation of gene annotation by comparative analyses.

For confirmation, alignments were translated to amino acids using MEGA version 4 [ 86].

The intent of using both of these methods was not to seek confirmation and alignment but rather to expand and present complementary findings and more in-depth insights.

Utilizing the selected CTT zebrafish sequence data identified above, AMOD software[27] was used to display the identities and alignments (above) for manual confirmation and selection of the translation initiation site (TIS).

Lastly, we consider possible confirmation of the alignment between the transmitting and receiving telescopes in orbit.

If situations have minimal or skeptical business input, then proceed with alignment anyway, and seek out confirmation in subsequent phases of EIM.

We therefore verified and recalculated dN/dS values as necessary for each gene using segments of high quality sequence and visual confirmation of protein alignments (see Methods).