The phrase "alignment conducted" is correct and usable in written English.
It can be used in contexts where an alignment process or activity has taken place, often in technical or organizational settings.
Example: "After the alignment conducted by the team, we were able to identify the discrepancies in the project."
Alternatives: "alignment performed" or "alignment executed".
Protein-coding genes were aligned in frame, as per the alignment conducted for the phylogenetic analysis.
Phylogenetic analyses of the CLTC alignment, conducted to provide an estimate of the CLTC gene tree, used RAxML 7.0.4 [ 37].
EJ participated in sequence acquisition and alignment, conducted phylogenetic analyses and drafted the MS. GG participated in DNA sequence acquisition and analyses.
DH participated in the genome sequence alignment, conducted the quality control of the assembled raw data and added helpful ideas to the manuscript.
Genome alignment conducted on the eight complete genomes, using B. breve UCC2003 as reference sequence [ 8], established an average sequence length of 2,323,100 bp, where B. breve JCM 7017 represents the strain with the smallest chromosome (with a size of 2,288,919 bp), while B. breve UCC2003 possessed the largest chromosome (with a size of 2,422,684).
In this study, based on multiple sequence alignment conducted on genomic sequences of different strains and isolates of SrMV, the conserved region of coat protein (CP) genes was selected as the target gene and the interference sequence with size of 423 bp in length was obtained through PCR amplification.
Sequence alignments conducted by JTM and MJM and data analyses were undertaken by MJM.
We base this assessment on local TBA multisequence alignments conducted between entire rainbow trout and Atlantic salmon BAC clone assemblies.
In addition to whole-peptide alignments, this predicted effect on peptide structure was also observed in structural alignments conducted using only residues on the 5′-end of the peptide (residues −16 to −12).
Specifically, pairwise alignments of protein and mRNA sequences were estimated using a Smith-Waterman local alignment algorithm [ 79]; multiple sequence alignments were conducted using the ClustalW alignment algorithm [ 80].
Multiple sequence alignment was conducted using Jalview Desktop, with Muscle with defaults multiple sequence alignment web service for alignment.
