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Analysis of the relationship between the different members is based on pairwise alignment, compilation, and comparison of their SET-domains.
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Compilation... compilers?
ES participated in the database compilation, the sequence alignment and helped to draft the manuscript.
Based on these clades and considering the major clades of [ 23], groups consisting of a maximum of 50 sequences were selected as basis for the compilation of ITS alignments.
A similar approach was carried out where each of Arabidopsis and rice genome sequences was scanned against protein family profiles obtained from the NCBI National Centre for Biotechnology Informationn) conserved domain database (NCBI-CDD[ 18]), a compilation of multiple sequence alignments representing protein domains.
Based on preliminary phylogenetic analyses, 25 representative taxa were selected for compilation of PAL genes, sequence alignment and tree reconstruction.
The resulting workflow for 3D DESI-imaging MS dataset compilation was devised based on image alignment and peak matching algorithms published previously [ 23].
Sequences encoding RNase P RNAs of various genomes have been determined and a database established [ 53], which consists of a compilation of ribonuclease P RNA sequences, sequence alignments, secondary structures and three-dimensional models.
We constructed a database named SoybeanTFDB (http://soybeantfdb.psc.riken.jp) containing the full compilation of soybean TFs and significant information such as: functional motifs, full-length cDNAs, domain alignments, promoter regions, genomic organization and putative regulatory functions based on annotations of gene ontology (GO) inferred by comparative analysis with Arabidopsis.
Here's a compilation.
(Compilation from Model Craftsmen).
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