The phrase "alignment comparison" is correct and usable in written English.
It can be used in contexts where you are discussing the process of comparing alignments, such as in data analysis, programming, or research.
Example: "The alignment comparison revealed significant differences between the two datasets, indicating a need for further investigation."
Alternatives: "alignment analysis" or "alignment evaluation".
We performed whole-genome alignment comparison using LASTZ.
To understand the diverse function of each OsADF member, OsADF and AtADF genes were categorized into 6 clades (A-F) according to the protein sequence alignment comparison and un-rooted phylogenetic tree analysis (Additional file 2: Figure S1 and Additional file 3: Figure S2).
An amino acid sequence alignment comparison of the POM scFvs (the best binders) is shown in Supplementary Figure S6.
Following alignment, comparison of the published SPI-3 homolog sequences from S. Typhi and S. Typhimurium showed a high degree of nucleotide identity (92% on average), although this was not homogeneously distributed (Fig. 1).
The start sites were manually inspected and altered in an alignment comparison with the best match.
The resulting matched and validated homologues, paralogues and orthologues were used for the multiple alignment comparison.
PCR products were confirmed by sequencing and alignment comparisons through the NCBI Blast tool (http://blast.ncbi.nlm.nih.gov/Blast.cgi).nih.gov/Blast.cgi
The conceptually translated amino acid sequence of this open reading frame (467 amino acids) was used in alignment comparisons and phylogenetic analyses to reveal that LcUSP most closely resembles DmUSP relative to other known insect nuclear hormone receptors.
Overall, repetitive sequences amounted to 7.5% of the T. parvula genome based on similarity searches against genomic repeat databases and de novo clustering of repetitive sequences (Supplementary Tables 2,3). Figure 1a and b show repeat distributions in combination with overall sequence alignment comparisons using Circos plots.
The deduced amino acid sequence of rainbow trout CYP3A45 was 94% identical with trout CYP3A27, 72% with killifish CYP3A56, and 71% with both medaka CYP3A40 and killifish CYP3A30 in positional alignment comparisons.
Additionally, we provide qualitative evidence of this relationship through alignment comparisons.
