The phrase "alignment compared with the" is correct and usable in written English.
It can be used when discussing the relationship or differences between two or more items, particularly in contexts like research, analysis, or comparison.
Example: "The alignment compared with the previous study shows significant improvements in methodology."
Alternatives: "alignment in relation to the" or "alignment in comparison to the".
By comparing these two rich evolutionary models, PhyloCSF can observe many additional informative features of a given alignment compared with the d N / d S test.
From these BLAST hits, only those were further analyzed that were starting from the first position of the query protein and were having at least one premature stop codon inside the alignment compared with the parent protein.
Incomplete alignments reflect the reduced sensitivity of pairwise alignment compared with the HMM based methods used to annotate the Pfam domains in RPD2, and the fact that in the diverse set of homologous RPD2 domains, half of the detectable homologs share <33% sequence identity.
The evolution of local misorientations and microband structures were quantified by high-resolution electron backscatter diffraction in a field emission gun scanning electron microscope and their alignments compared with the traces of active slip planes and macroscopic shear stress planes.
Analysis of trees constructed from the RepA, RepB, RepC, TrbE, TrbK, TraI, TraR, TraM, TraG, and TraA protein alignments compared with the MAFFT alignments of each protein was accomplished by using the likelihood scores.
A number of studies have shown that the maximum likelihood approach can avoid systematic errors and makes more efficient use of information in the protein alignments compared with the counting approach [ 10].
Furthermore, it offers a sensitive version of the x-drop algorithm for seed-extension, which results in highly accurate alignments compared with the BLAST gold standard and our competitors.
It highly improved the quality of alignment compared with regular multiple sequence alignments namely for (i) the precise classification of the new OBPs into the three different subfamilies and (ii) the identification of residues in structurally conserved positions that would have been missed otherwise (supplementary fig. S3 a c, Supplementary Material online).
This suggests that the collagen fibers in the adventitia of these mice exhibited increased thickness, density and alignment compared with their sham-treated counterparts.
We performed an alignment compared with Arabidopsis thaliana (Supplementary Figure 1).
The current study by Won and colleagues concluded that patients undergoing revision ACL surgery have a greater incidence of significant varus alignment compared with patients undergoing primary ACL reconstruction.
